Preprints
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1. Saito, K., Tsuboi, M. and Takahashi, Y. (2024) Conserved variation across scales unveils dialectical relationships of micro- and macroevolution. bioRxiv
2. Gupta, A., Svensson, E. I., Frietsch, H. and Tsuboi, M. (2023) Stasis in the adaptive landscape of two ecologically similar and sympatric damselfly species. bioRxiv

Original Research Articles

1. Tsuboi, M. and Takahashi, T. (2024) Sexually divergent selection, allometric constraints, and the evolution of sexual dimorphism in cichlids from Lake Tanganyika. Journal of Evolutionary Biology in press
2. Saito, K., Tsuboi, M. and Takahashi, Y. (2024) Developmental noise and phenotypic plasticity are correlated in Drosophila simulans. ​Evolution Letters 8:397-405​
3. Nilsson, K. J., Tsuboi, M., Opedal, Ø, and Runemark A. (2024) Colonization of a novel host plant reduces phenotypic variation. Evolutionary Biology 51:269-282
4. Tsuboi, M.,  Kopperud, B.T., Matschiner, M., Grabowski, M. Syrowatka, C., Pélabon, C. and Hansen, T. F. (2024) Antler Allometry, the Irish Elk and Gould Revisited Evolutionary Biology 51:149-165
5. Grabowski, M., Pienaar, J., Voje, K. L., Andersson, S., Fuentes-González, J., Kopperud, B.T., Moen, D. S., Tsuboi, M., Uyeda, J. and Hansen, T.F. (2023) A Cautionary Note on “A Cautionary Note on the Use of Ornstein Uhlenbeck Models in Macroevolutionary Studies” Systematic Biology 72:955-963
6. Grabowski, M., Kopperud, B.T., Tsuboi, M., and Hansen, T.F. (2023) Both diet and sociality affected primate brain-size evolution. Systematic Biology 72:404-418​
7. Hansen, T. F., Bolstad, G. and Tsuboi, M. (2022) Analyzing disparity and rates of morphological evolution with model-based phylogenetic comparative methods. Systematic Biology 71:1054-1072
8. Tsuboi, M. (2021) Exceptionally steep brain-body evolutionary allometry underlies the unique encephalization of Osteoglossiformes. Brain, Behavior and Evolution 96:49-63
9. Tsuboi, M., Kopperud, B. T., Syrowatka, C., Grabowski, G., Voje, K. L., Pélabon, C. and Hansen, T. F. (2020) Measuring complex morphological traits with 3D photogrammetry: A case study with Deer antlers. Evolutionary Biology 47:175-186
10. Tsuboi, M. (2019) Biological interpretations of the biphasic model of ontogenetic brain-body allometry: a reply to Packard. Biological Journal of the Linnean Society 128: 1068-1075
11. Tsuboi, M., van der Bijl, W., Kopperud, B. T., Erritzøe, J., Voje, K. L., Kotrschal, A., Yopak, K. E., Collin, S. P., Iwaniuk, A. N. and Kolm, N. (2019) Reply to: Comparisons of static brain-body allometries across vertebrates must distinguish indeterminate and determinate growth. Nature Ecology & Evolution 3: 1405-1406​​
12. Tsuboi, M., van der Bijl, W., Kopperud, B.T., Erritzøe, J., Voje, K.L., Kotrschal, A., Yopak, K.E., Collin, S.P., Iwaniuk, A.N. and Kolm, N. (2018) Breakdown of brain-body allometry and the encephalization of birds and mammals. Nature Ecology & Evolution 2: 1492-1500
13. Hayward, A., M. Tsuboi, Owusu, C., Kotrschal, A., Buechel, D. S., Zidar, J., Cornwallis, C. K., Løvlie, H. and Kolm, N. (2017) Evolutionary associations between host traits and parasite load: insights from Lake Tanganyika cichlids. Journal of Evolutionary Biology 30: 1056-1067 
14. Tsuboi, M., Lim, A. C. O., Ooi, B. L., Yip, M. Y., Chong, V. C., Ahnesjö, I. and Kolm, N. (2017) Brain size evolution in pipefishes and seahorses: the role of feeding ecology, life history and sexual selection. Journal of Evolutionary Biology 30: 150-160 
15. Tsuboi, M., Kotrschal, A., Hayward, A., Buechel, D. S., Zidar, J., Løvlie, H. and Kolm, N. (2016) Evolution of brain-body allometry in Lake Tanganyika cichlids. Evolution 70: 1559-1568​
16. Tsuboi, M., Shoji, J., Sogabe, A., Ahnesjö, I. and Kolm, N. (2016) Within species support for the expensive tissue hypothesis: a negative association between brain size and vicseral fat storage  in females of Pacific seaweed pipefishes. Ecology and Evolution 6: 647-655
17. Tsuboi, M., Gonzalez-Voyer, A. and Kolm, N. (2015) Functional coupling constraints craniofacial diversification in Lake Tanganyika cichlids. Biology Letters 11: 20141053
18. Tsuboi, M., Husby, A., Kotrschal, A., Hayward, A., Buechel, D. S., Zidar, J., Løvlie, H. and Kolm, N. (2015) Comparative support for the expensive tissue hypothesis: big brains are correlated with smaller gut and greater parental investment in Lake Tanganyika cichlids. Evolution 69: 190-200
19. Tsuboi, M., Gonzalez-Voyer, A. and Kolm, N. (2014) Phenotypic integration of brain size and head morphology in Lake Tanganyika cichlids. BMC Evolutionary Biology 14:39
20. Tsuboi, M., Gonzalez-Voyer, A., Höglund, J. and Kolm, N. (2011) Ecology and mating competition influence sexual dimorphism in Tanganyikan cichlids. Evolutionary Ecology 26: 171-185

Review article

1. Tsuboi, M., Sztepanacz, J., De Lisle, S., Voje, K. L., Grabowski, M., Hopkins, M. J., Porto, A., Balk, M., Pontarp, M., Rossoni, D., Hildesheim, L. S., Horta-Lacueva, Q. J. B., Hohmann, N., Holstad, A., Lürig, M., Milocco, L., Nilén, S., Passarotto, A., Svensson, E. I., Villegas, C., Winslott, C., Liow, L. H., Hunt, G., Love, A. C. and Houle, D. (2024) The Paradox of Predictability Provides a Bridge between Micro- and Macroevolution. Journal of Evolutionary Biology in press
2. Love, A., Grabowski, M., Houle, D., Liow, L. H., Porto, A., Tsuboi, M., Voje, K. L. and Hunt G. (2022) Evolvability in the fossil record. Paleobiology 48: 186-209
3. Lürig, D. M., Donoughe, S., Svensson, E. I., Porto, A. and Tsuboi, M. (2021) Computer vision, machine learning, and the promise of phenomics in ecology and evolutionary biology. Frontiers in Ecology and Evolution 9:148

Book chapter

1. Voje, K. L., Grabowski, M., Holstad, A., Porto, A., Tsuboi, M. and Bolstad, G. H. (2023) Does lack of evolvability constrain adaptation? If so, on what time scales? in Evolvability: Unifying Concept in Evolutionary Biology? MIT Press